PGML0581, PGML0581 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0581
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAAAA)3
Primer 1PGML0581_F: CCAACAGTGTAATCGTGGCT
Primer 2PGML0581_R: GTCCCTAGTTTCGGAGACCC
Product Length240
Publication[view all]
CommentBAC_ID=FITB10684.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D01chromosomeD01:10976119..10976355 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018215.1chromosomeCM018215.1:10931808..10932045 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_01chromosomeD5_01:10498704..10498941 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
Dt_chr2chromosomeDt_chr2:44773588..44773824 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D01chromosomeD01:10092204..10092440 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D01chromosomeGhir_D01:11400828..11401064 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D01chromosomeD01:11172433..11172669 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D01chromosomeD01:10930547..10930783 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D01chromosomeD01:11290360..11290596 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_D01chromosomeGbar_D01:11539185..11539422 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D01chromosomeD01:11351902..11352139 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017649.1chromosomeCM017649.1:12070021..12070255 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017701.1chromosomeCM017701.1:11321880..11322115 +Gossypium darwinii (AD5) genome HGS_v1.1
D01chromosomeD01:11609132..11609368 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr01chromosomeChr01:10342108..10342347 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
Chr02chromosomeChr02:11284702..11284932 +Gossypium davidsonii (D3d-8) genome CRI_v1
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch23_Dt.09N/A12.6PGML0581View
2Yumian-1 x 7235, RIL (2015)AD_ch23_Dt.09N/A19PGML581View
Sequence
>PGML0581 ID=PGML0581; Name=PGML0581; organism=Gossypium raimondii; type=genetic_marker; length=240bp
CCAACAGTGTAATCGTGGCTATAAAAGCCACGAAGTTAACCATGTATTTT
TACACACAAAAAACAGAATACAAAGAGGAATTTCAGTCCAAAGGTTGATT
TTTTTAATTTCTGCTTCATTTCTAGTCCATTTTTTTATTATTTTTTATTT
ACGTGTTGTTATGAAAATAAAATAAAATAAAAAGAATAAACGGAAAAAGG
TAAGGGACTAACCTATATTCGGGTCTCCGAAACTAGGGAC