PGML0575, PGML0575 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0575
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(T)16
Primer 1PGML0575_F: CTTGAAGCCAATAGGTCCCA
Primer 2PGML0575_R: TGGTCGTGTTGGTATGCACT
Product Length164
Publication[view all]
CommentBAC_ID=FITB10523.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:7733484..7733644 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:8430003..8430160 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:7335408..7335570 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:8620320..8620475 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:7251884..7252046 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_07chromosomeKI_07:32055156..32055310 -Gossypioides kirkii genome ISU_v3n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:8670117..8670274 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:46551564..46551724 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:104807587..104807742 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold120.1supercontigscaffold120.1:522481..522638 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:40067313..40067473 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:7272931..7273091 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:7773208..7773365 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:7580874..7581034 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:8736888..8737045 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:7257974..7258134 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:8264378..8264535 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:7531850..7532010 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:8702439..8702596 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:7386231..7386391 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:8772595..8772752 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:7627250..7627412 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:8578298..8578453 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:7473691..7473853 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:8398234..8398389 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:7731308..7731470 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:8390204..8390360 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:7753161..7753321 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:8613486..8613641 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:7593039..7593201 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:8515824..8515978 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:7664576..7664736 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:8772759..8772916 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:8868407..8868562 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:8767811..8767968 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:46327977..46328140 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:8698373..8698532 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:7428959..7429122 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:6801214..6801465 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:7157374..7157603 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:7365763..7365922 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:5182083..5182249 +Gossypium gossypioides (D6) genome ISU_v1n/a
E07chromosomeE07:83908212..83908377 -Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:7784934..7785089 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:13008658..13008813 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0575 ID=PGML0575; Name=PGML0575; organism=Gossypium raimondii; type=genetic_marker; length=164bp
CTTGAAGCCAATAGGTCCCATGTGGATCGCCTGAGGGGTCAGTGCACCAG
AAATCATCACCTATGACAGCACAGAATGATATTATATTAAACCTAGACTT
AATCCCATACTGTTTTTTTTTTTTTTTTCTTATTTTAGTTTTCAAGTGCA
TACCAACACGACCA