PGML0571, PGML0571 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0571
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AGAGG)3
Primer 1PGML0571_F: TGTGACAAGTGGAGAGTCGAA
Primer 2PGML0571_R: GCTACCACGAAGGGTATGGA
Product Length117
Publication[view all]
CommentBAC_ID=FITB10530.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold_1062supercontigscaffold_1062:23352..23468 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D10chromosomeD10:42159055..42159171 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:42222490..42222606 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:22413903..22414019 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_10chromosomeD10_10:22723201..22723317 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr11chromosomeDt_chr11:33442764..33442880 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4426_D10supercontigscaffold4426_D10:52476..52592 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:43507470..43507586 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:43377778..43377894 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:42590405..42590521 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:41128177..41128293 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:41845377..41845493 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:42263234..42263350 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:41902189..41902305 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:43962085..43962201 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:43290266..43290382 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:44029395..44029511 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:40041423..40041539 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:24596617..24596738 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:33937062..33937173 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:27559788..27559904 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:42539158..42539264 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:29761873..29761989 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:22931230..22931351 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:29726465..29726581 +Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0571 ID=PGML0571; Name=PGML0571; organism=Gossypium raimondii; type=genetic_marker; length=117bp
TGTGACAAGTGGAGAGTCGAAATAAGAAACTAAGGGAGGAAGAGAGGAGA
GGAGAGGAGAATAAAAGAATATAAGAAGGAAGGGAGAAGACTGTTGTTCC
ATACCCTTCGTGGTAGC