PGML0550, PGML0550 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0550
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(GAA)11
Primer 1PGML0550_F: AGAAGAGAAACCCACGAGCA
Primer 2PGML0550_R: TTCCTTCTGCTACTGGTTAGGG
Product Length330
Publication[view all]
CommentBAC_ID=FITB9135.x1
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:14397718..14398047 -
A11chromosomeA11:15900782..15901087 -
CM018225.1chromosomeCM018225.1:13431869..13432210 -
CM018212.1chromosomeCM018212.1:15514838..15515143 -
D5_11chromosomeD5_11:52608196..52608525 +
KI_11chromosomeKI_11:10232706..10233026 -
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:108094592..108094897 +
CM016624.1chromosomeCM016624.1:20548516..20548821 -
Dt_chr7chromosomeDt_chr7:12823975..12824304 +
D11chromosomeD11:13834091..13834420 -
A11chromosomeA11:15649915..15650220 -
Ghir_D11chromosomeGhir_D11:14018316..14018645 -
Ghir_A11chromosomeGhir_A11:16032970..16033275 -
D11chromosomeD11:13659300..13659629 -
A11chromosomeA11:15490004..15490309 -
D11chromosomeD11:14014895..14015224 -
A11chromosomeA11:15746913..15747218 -
D11chromosomeD11:13803832..13804161 -
A11chromosomeA11:16152832..16153137 -
Gbar_D11chromosomeGbar_D11:13730806..13731144 -
Gbar_A11chromosomeGbar_A11:15260493..15260798 -
D11chromosomeD11:13639150..13639491 -
A11chromosomeA11:15526818..15527123 -
CM017633.1chromosomeCM017633.1:13540671..13541015 -
CM017620.1chromosomeCM017620.1:15833470..15833775 -
CM017659.1chromosomeCM017659.1:13924098..13924424 -
CM017646.1chromosomeCM017646.1:15900555..15900860 -
CM017711.1chromosomeCM017711.1:13723101..13723442 -
D11chromosomeD11:14296671..14297000 -
A11chromosomeA11:16293266..16293571 -
Chr11chromosomeChr11:16626528..16626830 -
Chr11chromosomeChr11:16212518..16212823 -
Chr11chromosomeChr11:50530598..50530927 +
B_11chromosomeB_11:15089496..15089821 -
Chr07chromosomeChr07:13399938..13400264 -
chr07chromosomechr07:11269911..11270231 -
Chr07chromosomeChr07:13454475..13454804 -
Chr07chromosomeChr07:10586476..10586808 -
Chr07chromosomeChr07:9425223..9425536 -
Chr07chromosomeChr07:10903207..10903536 -
E11chromosomeE11:16779574..16779894 -
F11chromosomeF11:13655262..13655590 -
Chr11chromosomeChr11:162677952..162678263 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch21_Dt.11N/A90.4PGML0550View
Sequence
>PGML0550 ID=PGML0550; Name=PGML0550; organism=Gossypium raimondii; type=genetic_marker; length=330bp
AGAAGAGAAACCCACGAGCAGGAAATGCCAAGAAACAAAAATGACAACAA
GAATGAAGGTAAGTGGAAAAAAGGGGTGAAGATAAAGAGGGAGGGAACCT
GAAGAAGAGCAATAGCATAGTTGATGTAGTTCCGAATAGCACCTTGGGAA
GTGATTCGGATCTCATTCTCGTTAATGGGTGATTCAGGCTTTGGCTTCTC
TACTTTCTGGTATCTATCCATTGGTTGTTGATGGTGGAATAGTGGTGAAG
CAGTGAGAAGAAGAAGAAGAAGAAGAAGAACAAGAAGAAGGAAAACCCCT
GATTTAAACCCTAACCAGTAGCAGAAGGAA