PGML0548, PGML0548 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0548
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CTCTT)2
Primer 1PGML0548_F: ACCTTCCAACAGCCATCAAC
Primer 2PGML0548_R: TCTGAGGGAATTCGAGTCGT
Product Length265
Publication[view all]
CommentBAC_ID=FITB8918.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:30075182..30075446 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:53479660..53479924 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:28546648..28546912 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:49864842..49865106 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:23367616..23367880 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_09chromosomeKI_09:21957034..21957298 +Gossypioides kirkii genome ISU_v3n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:58170951..58171215 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:20594000..20594264 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:35812396..35812660 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr6chromosomeDt_chr6:20385552..20385816 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:28857073..28857337 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:48522044..48522308 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:30584479..30584743 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:53504009..53504273 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:30493682..30493946 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:55917425..55917689 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:30202148..30202412 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:55329094..55329358 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:28595160..28595424 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:52149296..52149560 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:29114281..29114545 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:50638309..50638573 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:31916966..31917230 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:51861498..51861762 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:29449895..29450159 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:51248474..51248738 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:30542003..30542267 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:54243368..54243632 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:30039193..30039457 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:51592774..51593038 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:31712976..31713240 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:56486433..56486697 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:55073873..55074137 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:58207936..58208200 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:28827653..28827917 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:44516827..44517092 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:28886242..28886506 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:23223102..23223366 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:20031280..20031544 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:30495499..30495763 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:21665369..21665633 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:15950605..15950869 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:19604356..19604620 +Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:31001662..31001926 -Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:45385494..45385758 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0548 ID=PGML0548; Name=PGML0548; organism=Gossypium raimondii; type=genetic_marker; length=265bp
ACCTTCCAACAGCCATCAACAATCCAACGTTTCACTGCCTCCAGGGCTCC
TCTCTCCTCACTGTCACAAGGACCTCCTCTCTTACCTCCATTCACGCGCC
GCCTCTCCTTCTCCCTCCTCCGTCGTCTGCGAGTACGTCATCTCTCTTCT
CTCCCTCATTTCACTCTCTCCCGGAACCCCCACTGTCTGTTCTTTGCTCT
CTTCTCTTCTCTCATCATACACTCAACTATTCCCTTCGCTTCCCCACGAC
TCGAATTCCCTCAGA