PGML0547, PGML0547 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0547
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(A)15
Primer 1PGML0547_F: CAGCAAGGACATGACCAAGA
Primer 2PGML0547_R: CTCTGTTGGTTGATGCACAG
Product Length205
Publication[view all]
CommentBAC_ID=FITB8965.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:7009006..7009212 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:7671013..7671215 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:6254511..6254718 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:7925176..7925384 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:6098549..6098753 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:6121685..6121895 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:53825776..53825980 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:137057301..137057513 +Gossypium australe (G2) genome CRI_v1.1n/a
D06chromosomeD06:6041479..6041682 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:6485716..6485919 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:6860376..6860581 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:7997982..7998185 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:6617559..6617765 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:7598112..7598315 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:6844192..6844397 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:7915389..7915592 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:6365293..6365499 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:7850047..7850250 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:6269932..6270139 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:7740397..7740604 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:6232837..6233110 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:7769631..7769841 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:6856046..6856249 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:7981751..7981956 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:6438176..6438381 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:7834882..7835089 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:6388816..6389022 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:8014778..8014986 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:6910843..6911048 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:7970522..7970724 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:8012916..8013125 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:5983766..5983970 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:89667748..89667952 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:6487241..6487440 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:5684495..5684698 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:5299070..5299368 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:6728017..6728216 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:4092156..4092356 -Gossypium gossypioides (D6) genome ISU_v1n/a
E06chromosomeE06:108795255..108795456 +Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:6690614..6690824 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:191576749..191576948 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0547 ID=PGML0547; Name=PGML0547; organism=Gossypium raimondii; type=genetic_marker; length=205bp
CAGCAAGGACATGACCAAGAGTTGCTTTACGACTTTAATTTTTGATTAAC
AACAAATTTATATATATCTATTAAAATGAAAAGGTTTATATTAATTAACA
TCTCTAAGTCTAACTTCCAAGAATGATATGAGAATCTGTTATTGACCATA
CAAAAAAAAAAAAAAACTGTGATCTCTTATGTGCACTGTGCATCAACCAA
CAGAG