PGML0544, PGML0544 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0544
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TTTAA)5
Primer 1PGML0544_F: TGCCATCCTAGAAGCTCGTT
Primer 2PGML0544_R: CCCGGCTAGACTGCAACTTA
Product Length324
Publication[view all]
CommentBAC_ID=FITB9012.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:71224236..71224554 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:67511987..67512305 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:1895584..1895907 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold56.1supercontigscaffold56.1:2319606..2319924 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:63950915..63951233 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:70854774..70855092 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:69389887..69390205 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:70442909..70443227 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:67156760..67157078 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:67374856..67375174 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:70251035..70251353 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:68797573..68797891 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:71583757..71584075 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:66999918..67000236 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:70780719..70781037 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:1740940..1741261 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:99910934..99911259 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:67691736..67692054 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_07chromosomeChr_07:47642648..47642967 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:69669840..69670163 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:44223535..44223856 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:36383509..36383828 +Gossypium gossypioides (D6) genome ISU_v1n/a
F11chromosomeF11:97696996..97697297 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:3349256..3349574 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0544 ID=PGML0544; Name=PGML0544; organism=Gossypium raimondii; type=genetic_marker; length=324bp
TGCCATCCTAGAAGCTCGTTCTCATGCAATCTGCAACAAACAATGTGGGT
AATATCAGAAATCCATTTCCTTAGACTATATGCTTAAATAGACTTTTACA
TTGTTGTATAGACTCGCCTAAATAGACTTATTTGAGTTAAGTTTAAAAGT
TTTTCGCTTCGAATCAGTTGAATTTAATTTAATTTAATTTAATTTAAAAA
TGTTTTTTAATCTAAATATATAAATTTTAAAAATTATTTAGTGATATGAA
TAATAAAATAAATCTTGGTCTCAACTTGAGCTTTGAAATTTATTTTAAAA
AATTTAAGTTGCAGTCTAGCCGGG