PGML0542, PGML0542 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0542
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CTTTTT)4
Primer 1PGML0542_F: TCCATATTACTTCCCACTTCCC
Primer 2PGML0542_R: AAATGGAACACCGTAATGGC
Product Length146
Publication[view all]
CommentBAC_ID=FITB9052.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:45053009..45053153 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:43696926..43697070 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:39869905..39870048 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_07chromosomeD10_07:12983465..12983610 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:74839903..74840047 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:42437644..42437788 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:28180133..28180284 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:46705925..46706069 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:46035501..46035645 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:46051109..46051253 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:42561954..42562098 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:28202078..28202229 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:44175266..44175410 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:44891166..44891310 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D10chromosomeD10:27979666..27979817 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:44176946..44177090 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:45102212..45102356 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:44646408..44646553 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:46573560..46573704 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:12202710..12202855 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:66855050..66855208 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:43341876..43342021 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_01chromosomeChr_01:28737688..28737846 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:43078639..43078784 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:29395330..29395475 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:28859018..28859167 +Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:18722538..18722684 -Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>PGML0542 ID=PGML0542; Name=PGML0542; organism=Gossypium raimondii; type=genetic_marker; length=146bp
TCCATATTACTTCCCACTTCCCCATCTTTTCTATTTTTTTGTTTTCTTTC
TTTTTTTTCTTTTTCTTTTTCTTTTTGTTAATTCTTCTATTTCAAATTTT
CTCCTACAATTTCTGGAATTAATTTTGCCATTACGGTGTTCCATTT