PGML0533, PGML0533 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0533
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATTTTA)3
Primer 1PGML0533_F: AAGTGCACCTTTGGGTTCTG
Primer 2PGML0533_R: TGAATTTGCGATTCCAAACA
Product Length370
Publication[view all]
CommentBAC_ID=FITB9081.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:22783100..22783469 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:21639913..21640282 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:36974547..36974999 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_11chromosomeD5_11:44518884..44519252 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:21029419..21029782 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:75713162..75713618 +Gossypium australe (G2) genome CRI_v1.1n/a
CM016615.1chromosomeCM016615.1:101149458..101149916 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr7chromosomeDt_chr7:23230147..23230516 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:21797575..21797944 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:22275090..22275459 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:21699726..21700095 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:22326960..22327329 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:22101037..22101406 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:21940345..21940714 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:21815596..21815965 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:21757420..21757789 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:41720263..41720714 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017659.1chromosomeCM017659.1:22208991..22209359 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:39658923..39659393 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:21819621..21819990 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:22683029..22683398 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:37230278..37230730 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:42434143..42434511 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:21871472..21871833 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_07chromosomeChr_07:18161836..18162283 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:21814728..21815087 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:14458658..14459016 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:17374449..17374967 +Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x G2005, RIL (2016)AD_ch19_Dt.05N/A81.75PGML00533View
Sequence
>PGML0533 ID=PGML0533; Name=PGML0533; organism=Gossypium raimondii; type=genetic_marker; length=370bp
AAGTGCACCTTTGGGTTCTGAGTTCGAGCCATCATGTGTGTGGTTTGGGG
AAATAATTTTAATTTTGTTTTGTTTTAAAGTCCAAAATACCTATTTTAAT
TTTAATTTTAATTTTTTTGGATAAAACTTCCCAAAATCAATTTCACATTC
TCTTGTTTCTCTCCCCACTCTTTCTTGTTAGTTTTTATTTTTCTTCTCTT
CTTTTTATTTTTTCTTTGAGAATTTAAAAATTATACATTTATCTGCGAGT
AAGTTCTCATCTTTAATTTTCGTTGATGGTTTTTGGGTAGTTCAAAGTTT
CGAGCAGAGATTTTAGAATTGTGTTGAAGAGGTATTTCGATCTTCTTTGG
TGTTTGGAATCGCAAATTCA