PGML0523, PGML0523 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0523
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ACA)7
Primer 1PGML0523_F: CTGTTGTCCAATTTCTTTGGAA
Primer 2PGML0523_R: TGGGTCTCGCTATTGGATTC
Product Length168
Publication[view all]
CommentBAC_ID=FITB403.x2 1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:52772345..52772521 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:90627937..90628090 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:49461459..49461635 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:87545111..87545264 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:10207309..10207476 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:7729680..7729841 +Gossypioides kirkii genome ISU_v3n/a
D10_12chromosomeD10_12:44436405..44436572 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:16478503..16478667 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2090.1supercontigscaffold2090.1:53946..54099 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr8chromosomeDt_chr8:45838863..45839039 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:49000808..49000984 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:76321788..76321941 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:51856303..51856479 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:95075077..95075230 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:50815768..50815944 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:95615097..95615250 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:51975864..51976040 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:93188101..93188254 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:49756915..49757091 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:90323586..90323739 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:48729791..48729967 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:90164166..90164319 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:49943973..49944149 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:89540715..89540868 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:89997250..89997403 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017634.1chromosomeCM017634.1:49824084..49824260 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:52637285..52637455 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:94229987..94230140 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:50422626..50422802 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017712.1chromosomeCM017712.1:50466448..50466619 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:89813880..89814033 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:51933721..51933897 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:96645876..96646029 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:97328121..97328274 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:47570119..47570286 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:76236376..76236540 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:47754961..47755128 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:37103547..37103714 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:34610401..34610568 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:49102483..49102650 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:33767110..33767277 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:26586343..26586495 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:32703635..32703802 -Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:100801340..100801507 -Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:80310566..80310730 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:4818434..4818598 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0523 ID=PGML0523; Name=PGML0523; organism=Gossypium raimondii; type=genetic_marker; length=168bp
CTGTTGTCCAATTTCTTTGGAACAATAACAAGCAAGTTTATGCCTTGTTA
ATTAACTTGAATAAAATCACCATCAACAACAACAACAACCACAACAGCAT
GGTTCCACCTGGAAAATTCTGCTGATAAAAGAATTATGTGATTGACCTGA
ATCCAATAGCGAGACCCA