PGML0518, PGML0518 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0518
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TA)8
Primer 1PGML0518_F: CTGTTTCTGCTCGGGAGTTC
Primer 2PGML0518_R: CATCTGAGTTGCACACCACC
Product Length261
Publication[view all]
CommentBAC_ID=FITB697.x2 1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:17590652..17590914 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:22002568..22002830 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:16923234..16923496 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:21989321..21989583 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:16017156..16017416 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
tig00017252_CRI-A2_v1.0.a1chromosometig00017252_CRI-A2_v1.0.a1:799347..799609 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:37674141..37674419 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:52302561..52302843 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr1chromosomeDt_chr1:33759740..33760002 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:17024550..17024812 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:21083722..21083984 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:17424170..17424432 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:22353662..22353924 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:16705382..16705644 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:21374843..21375105 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:17395375..17395637 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:22401840..22402102 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:16948091..16948353 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:22141067..22141329 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:17364922..17365184 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:21938237..21938499 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:16977791..16978053 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:21959407..21959669 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:17359316..17359576 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:21878127..21878389 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:17602321..17602587 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:21998913..21999175 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:17290535..17290795 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:22291735..22291997 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:17604962..17605224 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:22574893..22575155 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:22911752..22912014 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:23524436..23524698 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:36898681..36898941 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:22195095..22195359 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:17098087..17098345 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:14513971..14514571 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:13527370..13527638 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:16955767..16956033 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:13597245..13597500 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:10873915..10874175 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:13304635..13304890 -Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:67978424..67978698 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr07chromosomeChr07:42031366..42031625 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0518 ID=PGML0518; Name=PGML0518; organism=Gossypium raimondii; type=genetic_marker; length=261bp
CTGTTTCTGCTCGGGAGTTCCATTCCTGCATGGATGATTATGCATCAAGC
AGTAATCCAAGAACATGCTGAATTACAGTCGGTATGTAAAACCAATTTCC
CTGAGTAACATTTATGCAAGATTCTACAGCAACAGGGCAAGATGAATATA
TATATATATATACTTGCAACTTCATCCGATGCAAGAGATTTTATGTCTGT
ACTTTGTGCACCATATATTGGAAGCATGAATAAGTGATTTTGGTGGTGTG
CAACTCAGATG