PGML0517, PGML0517 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0517
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(GAAAA)3
Primer 1PGML0517_F: CGTCAAGTGGGACCTTGAGT
Primer 2PGML0517_R: CGCGTCTTACGGGTGTATTT
Product Length280
Publication[view all]
CommentBAC_ID=FITB641.x2 1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:15647961..15648240 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:13296682..13296961 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:12479017..12479295 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:22418056..22418343 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:13322868..13323151 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr3chromosomeDt_chr3:8887407..8887686 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3920_D03supercontigscaffold3920_D03:5000102..5000381 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:20911787..20912066 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:21885954..21886233 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:22031662..22031941 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:20840858..20841137 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D03chromosomeGbar_D03:13316424..13316703 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:22838553..22838832 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:14409990..14410269 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:14614540..14614819 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:13431933..13432212 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:14824773..14825052 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:79441077..79441364 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:13042668..13042947 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:13211360..13211638 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:5699119..5699403 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:5484783..5485066 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:13741854..13742132 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:6363561..6363845 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:4601565..4601847 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:6097611..6098016 +Gossypium lobatum (D7) genome ISU_v1n/a
F02chromosomeF02:18338466..18338747 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0517 ID=PGML0517; Name=PGML0517; organism=Gossypium raimondii; type=genetic_marker; length=280bp
CGTCAAGTGGGACCTTGAGTTGCAACACGATCCGACTTCTCGGGTGATGA
CTCCATACTCACATGACAAATGAAATTTATGGGTGACCTAGCTCCACAAC
ACCATCGTGAATTCAAACATTCCTTAAAACTATAATCATGTCTATCTCAA
ATACAGACAAAAATAAATTTACAAATTTTTAATTTCCAACCACAAGAAAA
GAAAAGAAAATTTACCAAAGTGAAAATGCGCCCTATAGAATACATTTTTA
TTAGAAGTGAAAATACACCCGTAAGACGCG