PGML0516, PGML0516 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0516
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(T)17
Primer 1PGML0516_F: GCAGAATCCGAAATCAGAGG
Primer 2PGML0516_R: GTCAAATTTCACTTTGGCCC
Product Length259
Publication[view all]
CommentBAC_ID=FITB609.x2 1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:852110..852361 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D08chromosomeD08:505251..505501 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:277962..278211 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:237290..237542 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:314514..314770 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:61498608..61498856 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:143199001..143199255 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2118.1supercontigscaffold2118.1:24677..24927 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold699.1supercontigscaffold699.1:281640..281891 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2272_A08supercontigscaffold2272_A08:114222..114472 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D08chromosomeD08:328739..328990 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:329655..329906 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:322953..323201 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:249171..249422 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:242407..242657 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:282941..283192 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:319075..319324 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:329994..330245 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:300113..300363 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:264736..264985 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:250518..250770 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:229631..229880 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:239131..239382 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:289884..290133 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:280471..280718 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:257812..258063 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:273084..273335 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:270367..270616 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:292575..292826 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:286202..286453 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:312982..313232 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:299558..299813 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:309481..309736 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:268795..269053 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:283290..283548 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:266325..266586 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_04chromosomeChr_04:205293..205646 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:260437..260789 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:216902..217223 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:265580..266318 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr08chromosomeChr08:198131418..198131669 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0516 ID=PGML0516; Name=PGML0516; organism=Gossypium raimondii; type=genetic_marker; length=259bp
GCAGAATCCGAAATCAGAGGAGCCGAATACTTGATGAATTTGTCAATTTC
TCTTTGGGAAGGGTTTTTTTTTTTTTTTTTAGGATTTTAATTTTCAATGT
GATAATATTTAGTTTCTTGGAGTGCATGTAACATCCTAAAATTTTGGTGT
TAGAAGTAGTAGTATTTGATTGAAAATAAGTGATCAATTCTCAAGAAAAT
GAGGAATTTAAGCAAAAAAAAAAAGGTGTATAAGTATAGGGGCCAAAGTG
AAATTTGAC