PGML0501, PGML0501 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0501
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAAAAA)3
Primer 1PGML0501_F: CTAAGGTCCATCTCGGCTTG
Primer 2PGML0501_R: CAAGGGCTGTTGCCTTAATC
Product Length226
Publication[view all]
CommentBAC_ID=FITB3844.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:28593928..28594157 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:64776719..64776962 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:26943814..26944042 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:64936629..64936872 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:35105696..35105921 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_10chromosomeD10_10:36650522..36650753 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr11chromosomeDt_chr11:26068521..26068750 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:34540147..34540390 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:27346333..27346562 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:57219927..57220170 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:68749695..68749936 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:26468976..26469205 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:70318562..70318805 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:27391841..27392070 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:68511213..68511456 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:27358189..27358418 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:64163081..64163324 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:26872749..26872977 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:65302886..65303129 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:27174399..27174627 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:66833875..66834118 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:26883751..26883980 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:27436745..27436974 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:27500303..27500530 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:27559473..27559702 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:71574230..71574473 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:27085165..27085390 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:57167163..57167392 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:38762346..38762570 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:23764788..23765014 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:19377138..19377369 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Sequence
>PGML0501 ID=PGML0501; Name=PGML0501; organism=Gossypium raimondii; type=genetic_marker; length=226bp
CTAAGGTCCATCTCGGCTTGTCTTTGAGCAGATATTTTGCTTATTCTTTG
TCTAAAAGTTTGTTCCATTTCAGGGTCTACAAGTAATAGATCAGTGATTC
GATCTATGCTCATAAAACACCTAAAATAAATAAAAAATAAATTATTAAAG
TTAAATAAAAATAAAAATAAAAACCACACTGTAAAAAATAATTTCACAAA
AAAAATGATTAAGGCAACAGCCCTTG