PGML0498, PGML0498 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0498
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAAAA)3,(TTTTA)3
Primer 1PGML0498_F: TGAAAGGTCGGTTTATTCGG
Primer 2PGML0498_R: GGAGTGTCGTAAGATTGAAATACC
Product Length299
Publication[view all]
CommentBAC_ID=FITB3931.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:11130253..11130562 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:9966055..9966364 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:10311192..10311490 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:33766209..33766519 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr6chromosomeDt_chr6:37715847..37716156 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:10997299..10997608 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:10972721..10973030 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:10578543..10578852 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:10596044..10596353 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:10584167..10584476 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:11166779..11167088 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:12337588..12337897 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:10062225..10062534 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:9852194..9852498 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:10365921..10366230 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:11063891..11064200 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:10571325..10571623 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:9849717..9850027 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr06chromosomeChr06:10051766..10052076 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>PGML0498 ID=PGML0498; Name=PGML0498; organism=Gossypium raimondii; type=genetic_marker; length=299bp
TGAAAGGTCGGTTTATTCGGTTAATGTTATTTCGGGTCGGTTAACCGACT
AAACACCCCTAAGAACTTGTTCGTTGAGAGTTCGCGATGAAGAACTTGTT
TATTGAGAATTCGTGTCAAGGTGGAGATTGTTAGAATTAAGTGACCCGAA
TCCTATTTAAATAAAATACAGTGGTAAAATAAAATAAAAGTAGAACTATA
CTTCTTTTATTTTATTTTAGAATAATTTTTTTAAAACCTTATTAAACTCT
ATCTATTTGATATTGATTAGAATAAGGTATTTCAATCTTACGACACTCC