PGML0488, PGML0488 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0488
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CAA)5
Primer 1PGML0488_F: ACCCTGTTTGCATAAATCCG
Primer 2PGML0488_R: TTATACCTCCCTTCCTTGCG
Product Length278
Publication[view all]
CommentBAC_ID=FITB4646.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:46789297..46789574 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:44501866..44502143 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:37975568..37975845 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:5755931..5756209 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr6chromosomeDt_chr6:6034268..6034545 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:44633204..44633481 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:46584662..46584939 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:46016635..46016912 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:46330898..46331175 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:44424956..44425233 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:45204749..45205026 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:47657555..47657832 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:45399619..45399896 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:46829942..46830219 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:46074738..46075015 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:48069428..48069705 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:44198453..44198730 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:63872509..63872789 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:44751714..44751992 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:37042845..37043123 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:31013652..31013929 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:45978837..45979115 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:34286491..34286769 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:25870002..25870299 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:31769903..31770181 +Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:7903786..7904066 -Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:64735655..64735841 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0488 ID=PGML0488; Name=PGML0488; organism=Gossypium raimondii; type=genetic_marker; length=278bp
ACCCTGTTTGCATAAATCCGCCCATGCACAGGAACCAAGCCAACATGCAA
GACAACAACAACAACAAGAAAAATCAGAACGATTCACAAGATTTAATAAC
ATGCCAAAATCCATACTTAACCATGACGGGCACCGCAAAGTAATTATTGT
CTATGATTAACACCCTGATTCCAGAAGGGGAAAAAATTATAAATAGCAGC
TGAAAATTATCACACTATCGAGAACATGTCAAAATTTCCCACGATATATT
TCTTAAACCGCAAGGAAGGGAGGTATAA