PGML0462, PGML0462 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0462
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATATGT)20
Primer 1PGML0462_F: ATGGGAGCGATATGTTTGCT
Primer 2PGML0462_R: GAGCGATAGGGCTCAGTGAT
Product Length391
Publication[view all]
CommentBAC_ID=FITB8789.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:57865434..57865782 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:54367087..54367441 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:12871708..12872098 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_03chromosomeD10_03:12894013..12894320 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D02chromosomeD02:55032076..55032424 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:56852829..56853183 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:57364270..57364618 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:58293916..58294262 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:55292346..55292700 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:54912243..54912597 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:56225387..56225747 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:57213086..57213476 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:58638743..58639123 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:55820213..55820549 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:59221511..59221859 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:50369015..50369405 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:53150068..53150410 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:39675826..39676322 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr05chromosomeChr05:54717292..54717604 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:29666066..29666347 +Gossypium gossypioides (D6) genome ISU_v1n/a
Sequence
>PGML0462 ID=PGML0462; Name=PGML0462; organism=Gossypium raimondii; type=genetic_marker; length=391bp
ATGGGAGCGATATGTTTGCTCACCGTAGCTATACTATTAATTGATAGGTG
CACTTGCCTTAGTCAAATTTTTAGTTAGTTCGGTGGACATCAATAGGCTT
ATCAATGCTATATGCATACTTAATGTATTGAAAGATGATGAAAATTGATT
TGTATTTGTAGGATATGAAATGGTTAGACATGGAATATATATGTATATGT
ATATGTATATGTATATGTATATGTATATGTATATGTATATGTATATGTAT
ATGTATATGTATATGTACATGTATATGTATATGTATATGTATATGTATAT
GTATATGTATATGCAATTGTCTCAAATTATGTTGTTAATGTTTATGTTAT
ATTATATCAAATCATGAAAGTATCACTGAGCCCTATCGCTC