PGML0455, PGML0455 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0455
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CT)7
Primer 1PGML0455_F: GCATTGGCTCCAATTGTTT
Primer 2PGML0455_R: TCATTCGATGTCATCTTCGG
Product Length196
Publication[view all]
CommentBAC_ID=FITB8482.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:4240510..4240703 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:4815448..4815643 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:3933688..3933881 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:4747163..4747358 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:3783713..3783908 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:4690023..4690218 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:56703607..56703802 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:7091490..7091686 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:65312096..65312289 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:51427748..51427937 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:4094036..4094229 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:4371555..4371750 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:4214615..4214808 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:4809540..4809735 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:4011989..4012182 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:4663390..4663585 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:4125329..4125522 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:4793030..4793219 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:3985845..3986038 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:5192603..5192798 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:4118297..4118490 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:4440046..4440241 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:4229155..4229348 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:4930287..4930482 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:4089235..4089426 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:4797916..4798111 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:4327034..4327229 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:4821178..4821371 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:4088899..4089092 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:4717502..4717697 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:4159484..4159677 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:4948846..4949041 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:5060908..5061103 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:4579877..4580072 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:3809008..3809203 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:81568775..81568966 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:3923259..3923449 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr09_5120429chromosomeChr09_5120429:1597..1791 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:4095462..4095655 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:3710492..3710686 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:3624457..3624651 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:5037795..5038003 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:3992959..3993152 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:193733214..193733412 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0455 ID=PGML0455; Name=PGML0455; organism=Gossypium raimondii; type=genetic_marker; length=196bp
GCATTGGCTCCAATTGTTTTACTGTTTGTTGTTTTTGAAGCAGCTTTTAC
TCTCTCTCTCTCTCTTTTCACTTTCAAATATTTTAATGTAAAGAAGTGCT
TATTTGCAAGTAAGATGAGATGAAAAAAATTGAGAACTTCTTATTGAAGG
CTATCCACAATTCGAATGTTGTTTATCCGAAGATGACATCGAATGA