PGML0451, PGML0451 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0451
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TCAACT)3
Primer 1PGML0451_F: GAAACAAGCGACGCAGTACA
Primer 2PGML0451_R: ATTGCCTAATTCGGGTCTCA
Product Length345
Publication[view all]
CommentBAC_ID=FITB2320.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:768713..769069 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:676366..676720 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:625822..626166 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:59850126..59850468 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:70120944..70121300 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:681903..682259 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:825344..825700 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:687391..687747 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:696664..697020 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:696824..697180 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:694220..694574 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:682864..683218 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:732453..732807 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:694983..695339 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:692506..692860 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:695226..695582 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:625734..626078 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:702188..702538 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:502882..503229 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:599414..599924 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:744393..744735 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:581232..581568 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:480211..480556 +Gossypium gossypioides (D6) genome ISU_v1n/a
Sequence
>PGML0451 ID=PGML0451; Name=PGML0451; organism=Gossypium raimondii; type=genetic_marker; length=345bp
GAAACAAGCGACGCAGTACATTTTTTTTCTCTGAAATTCAACTGCTTTTG
TATGCTTTAATTTGTGTGTATGTGTGTGTTTCGTTTGTTGTCTGAAATAT
ATGCAGCTAAACACTGTTCCGTTTATAGTAATTACACAGTTTAGACGAGA
CCGCATCACTTTGATGGTTATGTTTAACTTCCCTTTCATCTTCTTCATCT
ACCTCGTCTTGTTGTTAATAAAAAAAAGTTAAAATCACTATTTTCAACTT
CAACTTCAACTTCGCAACAATTTTTGGCTTAATTTTTTTTATATTAGTCC
TTCAACTTGAAAGTTGTTCCTGCATTGAGACCCGAATTAGGCAAT