PGML0435, PGML0435 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0435
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(GAAAA)3
Primer 1PGML0435_F: TTTGAAGTTGAGCGAACAAA
Primer 2PGML0435_R: GTGGAATCGTGTCTGGTGTG
Product Length193
Publication[view all]
CommentBAC_ID=FITB4304.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:62974333..62974523 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A01chromosomeA01:102523541..102523727 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:61390222..61390407 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:111647209..111647395 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:55255711..55255902 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:97935346..97935532 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:1283089..1283278 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:135680212..135680400 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:50580251..50580441 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:60058655..60058845 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:98514146..98514332 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:61796127..61796317 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:116207588..116207774 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:63249130..63249320 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:116622730..116622916 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:63227726..63227916 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:114509041..114509227 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:111292349..111292535 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:61560135..61560320 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:114123896..114124082 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:62250749..62250934 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:114122856..114123042 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:62585919..62586109 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:112683051..112683237 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:64075469..64075659 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:120221500..120221686 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:62053596..62053786 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:110302175..110302361 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:63704359..63704549 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:118152967..118153153 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:121376896..121377082 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:1483243..1483429 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:51062226..51062418 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:96618657..96618844 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:60030649..60030839 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:46167345..46167535 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:40827856..40828046 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:60908501..60908692 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:44616407..44616596 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:35162169..35162357 -Gossypium gossypioides (D6) genome ISU_v1n/a
E01chromosomeE01:115348865..115349053 -Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>PGML0435 ID=PGML0435; Name=PGML0435; organism=Gossypium raimondii; type=genetic_marker; length=193bp
TTTGAAGTTGAGCGAACAAAACATAAATTTACTAATAATTTAATAATCTT
TAATGTAGGTTAACCAAAAAAAAAATAGAGAGATTAAATAGCAAATTTCA
ACATAGTAGAGGGACTAAAAAACAAAATTAGACCAAAAGAGGAAAAGAAA
AGAAAAATGAAAATCCTGTTTAACACACCAGACACGATTCCAC