PGML0429, PGML0429 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0429
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAAAAT)3
Primer 1PGML0429_F: AGTCGTTGCCGGAACAATTA
Primer 2PGML0429_R: GGCCCATGAACACCTCTAAG
Product Length293
Publication[view all]
CommentBAC_ID=FITB4405.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:14272846..14273138 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D03chromosomeD03:40105515..40105807 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:14131981..14132273 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018217.1chromosomeCM018217.1:40638269..40638560 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:34567796..34568087 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:97672294..97672586 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:39090346..39090639 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr3chromosomeDt_chr3:11419269..11419561 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr4chromosomeAt_chr4:91923336..91923628 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:12997302..12997594 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D03chromosomeD03:34089045..34089337 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:15257072..15257363 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:40074647..40074937 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:14568922..14569214 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:41553452..41553744 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:15086558..15086850 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:41007655..41007947 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:14363861..14364153 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D03chromosomeD03:40438747..40439039 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:14103827..14104119 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:39059100..39059391 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:14056480..14056772 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D03chromosomeD03:41588780..41589071 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:14556829..14557121 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017625.1chromosomeCM017625.1:40035121..40035413 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:14878178..14878470 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017651.1chromosomeCM017651.1:43937641..43937933 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:14316104..14316396 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017703.1chromosomeCM017703.1:41569174..41569465 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:15400736..15401028 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D03chromosomeD03:42105892..42106184 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:14338498..14338789 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:103540471..103540763 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:36652421..36652713 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:14271467..14271759 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:38022563..38022855 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:24755389..24755777 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:21160734..21161027 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:40017720..40018013 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:21604309..21604676 -Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:18482216..18482508 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr03chromosomeChr03:23047414..23047706 -Gossypium lobatum (D7) genome ISU_v1n/a
F02chromosomeF02:63418245..63418537 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0429 ID=PGML0429; Name=PGML0429; organism=Gossypium raimondii; type=genetic_marker; length=293bp
AGTCGTTGCCGGAACAATTATAAACATTTAATAATCAATTTACACTATAA
TACATGCATTCCTACTCAAAACGTCTTAGAATTACGTTATACGATCTTTT
TCGAGACTTATTCAAGCTTACAAAAGCCCATTTACTAACCTGAGCTTGAA
AAAGGACCAAATTGTAATTTTTTAAAGCTTTCAAAATAGGTATCAGATAC
CCTATAAAGGTACTGATACCATTTTGGCTTTCGATGTTTTAGAAAAATAA
AAATAAAAATGAAGGTACTGATACTTAGAGGTGTTCATGGGCC