PGML0428, PGML0428 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0428
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(T)16
Primer 1PGML0428_F: TGTAGTGAGCAAGGAGCACG
Primer 2PGML0428_R: TAACCCTCTAATGCCGATGC
Product Length319
Publication[view all]
CommentBAC_ID=FITB4525.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:36965786..36966099 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:18654611..18654928 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:37550428..37550742 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:18238293..18238609 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:31533022..31533339 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:33499781..33500037 +Gossypioides kirkii genome ISU_v3n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:92981763..92982083 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:36099317..36099636 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016615.1chromosomeCM016615.1:85196486..85196800 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr3chromosomeDt_chr3:14531560..14531873 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr12chromosomeAt_chr12:65436691..65437008 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:30991346..30991659 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:17365818..17366135 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:36989333..36989646 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:19506349..19506666 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:38555574..38555887 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:18702894..18703211 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:37929456..37929769 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:19325067..19325384 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:37350902..37351215 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:18593280..18593597 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D03chromosomeGbar_D03:35964481..35964795 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:18241358..18241674 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:38547688..38548002 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:18202501..18202818 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:36954733..36955046 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:18695530..18695848 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:40825529..40825842 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:19267666..19267986 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:38563834..38564148 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:18289545..18289864 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:39003650..39003963 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:19665130..19665447 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:21578576..21578894 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:99076127..99076448 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:33617505..33617823 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:18489628..18489946 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:35067591..35067908 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:22446252..22446663 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr03chromosomeChr03:36985817..36986131 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:19566609..19566926 +Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:16708430..16708739 +Gossypium gossypioides (D6) genome ISU_v1n/a
F02chromosomeF02:59626958..59627273 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr02chromosomeChr02:36611268..36611584 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0428 ID=PGML0428; Name=PGML0428; organism=Gossypium raimondii; type=genetic_marker; length=319bp
TGTAGTGAGCAAGGAGCACGGATGTCTGCTATGGATAGCTCGAGTAGAAA
TGCTGGTGACATGCTTGATCGCCTTACTCTCACATATAACAGGTCTCGAT
CTATTTTTATCATTTATGCATGCTTTCATGGTAGTCTTAAAGTCACGTGT
TGAGCCTCATTTGGTTTTTTTTTTTTTTTCTTTCTAATTTTCTTATTCCT
CTTTTCATAGCTCTGAAGTAGATATTTTGTGTGTCGTATTTGTGTTGCAG
AACCCGTCAAGCTTCAATCACAACTGAGTTGATTGAGATTATATCAGGAG
CATCGGCATTAGAGGGTTA