PGML0427, PGML0427 (genetic_marker) Gossypium raimondii

Marker Overview


Name	PGML0427
Genbank ID	N/A
Type	SSR
Species	Gossypium raimondii
Repeat Motif	(AAT)17
Primer 1	PGML0427_F: AAATGGGTAAACAATAAAGGCAAA
Primer 2	PGML0427_R: TCAGTCCTTCTGCTTCTGGG
Product Length	238
Publication	[view all]
Comment	BAC_ID=FITB4421.y1

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
CM018222.1	chromosome	CM018222.1:4957626..4957837 +	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
D5_11	chromosome	D5_11:65509628..65509862 -	Gossypium raimondii (D5) 'D5-4' genome NSF_v1	n/a
Ghir_D05	chromosome	Ghir_D05:23294263..23294478 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
Gbar_D08	chromosome	Gbar_D08:5086010..5086221 +	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
D08	chromosome	D08:5210181..5210392 +	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017708.1	chromosome	CM017708.1:5197666..5197880 +	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
Chr07	chromosome	Chr07:40764359..40764570 +	Gossypium raimondii (D5) 'Grai D502' genome HAU_v1	n/a

Publications


Year	Publication
2015	Tang S, Teng Z, Zhai T, Fang X, Liu F, Liu D, Zhang J, Liu D, Wang S, Zhang K, Shao Q. Construction of genetic map and QTL analysis of fiber quality traits for Upland cotton (Gossypium hirsutum L.). Euphytica. 2015 Jan 1;201(2):195-213.

Sequence

>PGML0427 ID=PGML0427; Name=PGML0427; organism=Gossypium raimondii; type=genetic_marker; length=238bp
AAATGGGTAAACAATAAAGGCAAATAATAAAAATAAAAGCAATAATGATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGGTAAT
AAAACTAATTACTTAAAAAAAACAATAAAAAACGGGACTAAATAAAAAAA
AATGCAAAATCCCAGGGGAGAAAAGTAAAAAAGAAAAAAACTAAAACAGG
GACCAGATTGGAGGGAAGCCCAGAAGCAGAAGGACTGA

Search form

PGML0427, PGML0427 (genetic_marker) Gossypium raimondii