PGML0415, PGML0415 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0415
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CTTTTT)3
Primer 1PGML0415_F: CTGCTTGCAATTGGTTGAGA
Primer 2PGML0415_R: TCTCTTGAATTGTGGCCTCC
Product Length148
Publication[view all]
CommentBAC_ID=FITB4385.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:66308945..66309092 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:62457153..62457300 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:4501783..4501930 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_03chromosomeD10_03:4429731..4429878 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr5chromosomeDt_chr5:11397823..11397970 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:63449500..63449647 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:65143566..65143713 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:65272572..65272719 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:66480474..66480621 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:63589852..63589999 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:63055036..63055183 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:64361994..64362141 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:65412086..65412233 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:67036418..67036565 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:63953624..63953771 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:67488946..67489093 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:58592940..58593087 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:61551509..61551650 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:46424733..46425040 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:40070073..40070216 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:63079716..63079863 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:42159656..42159911 +Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0415 ID=PGML0415; Name=PGML0415; organism=Gossypium raimondii; type=genetic_marker; length=148bp
CTGCTTGCAATTGGTTGAGACAACTTCAATTCCAGCACCATGACTTCAAC
TTCTTCATGTCTCGTCAGTTCCAAAATCCCTAATGTTAACCCTAGTCATA
GTTTCTTTTTCTTTTTCTTTTTTACAAAGGAGGCCACAATTCAAGAGA