PGML0410, PGML0410 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0410
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATTTA)3
Primer 1PGML0410_F: GGGTTTGAACAGTTTACGCA
Primer 2PGML0410_R: TGTTGGTTCATTGGTTCAGC
Product Length377
Publication[view all]
CommentBAC_ID=FITB8876.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:28427197..28427558 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:27093978..27094355 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:21827821..21828197 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:21824171..21824520 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr6chromosomeDt_chr6:21926149..21926649 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:27219177..27219538 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:29169576..29169937 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:28981075..28981436 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:28674818..28675179 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:27063990..27064351 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:27679231..27679608 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:30507623..30508000 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:28049980..28050356 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017709.1chromosomeCM017709.1:28584279..28584655 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:30135467..30135828 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:27480204..27480580 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:27421579..27421939 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_06chromosomeChr_06:19232799..19233148 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Sequence
>PGML0410 ID=PGML0410; Name=PGML0410; organism=Gossypium raimondii; type=genetic_marker; length=377bp
GGGTTTGAACAGTTTACGCAAAACTACATTGGACAAGGAAGACAACAATC
AATGTTTTCCAAAATTGGACAACCAATCACAGTAATTTAACACAACACAA
ACTTACCCAACAACAGTAGCATACAAGACGTGTAAATCTAAGCAGCGATT
GAATGAAAGACAAAGAAATAAAAAACTAAAAGGGAAAGAGACAAAAAAGG
AAGAACAAAGGAAAGGGGAAAATAGGAAGTAGAAAGAAGAAAGAAGAGGG
AAACATTTAATTTAATTTAACCACCAATCAAAATTCCAACATTAAGAAAA
AAATATTACTTAACGCATACGCTGAGAGTCGAACACAGGACTAAACCGAA
TATAGAAGCTGAACCAATGAACCAACA