PGML0400, PGML0400 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0400
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATT)12
Primer 1PGML0400_F: AGGGAGTGTTTGAATGCAGC
Primer 2PGML0400_R: CTGGCTTTGAGTAGCCCTTG
Product Length143
Publication[view all]
CommentBAC_ID=FITB9130.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:1179788..1179927 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:1050137..1050276 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:962858..963000 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:59465823..59465959 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:68265906..68266045 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:1082397..1082536 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:1196227..1196366 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:1083808..1083947 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:1107699..1107838 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:1107973..1108112 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:1047675..1047814 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:1185978..1186117 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:1073816..1073955 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:1050996..1051135 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:1056570..1056709 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:1106332..1106471 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:968063..968202 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:1054160..1054296 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_09chromosomeChr_09:1146383..1146519 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:1083352..1083496 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:955585..955739 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:723820..723996 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:1016510..1016667 +Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0400 ID=PGML0400; Name=PGML0400; organism=Gossypium raimondii; type=genetic_marker; length=143bp
AGGGAGTGTTTGAATGCAGCTGCACAATGGGAGATATTATTATTATTATT
ATTATTATTATTATTATTATTAATCGAAGAGGCAGCCAGCGCCAACGGAA
TTGAACCTTCGTTTGCCGTTTTTCAAGGGCTACTCAAAGCCAG