PGML0394, PGML0394 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0394
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TCCAAA)3
Primer 1PGML0394_F: ACCCAAATCATGGTTTCCAA
Primer 2PGML0394_R: TTTGTCTCTCCTGCTCTGCTT
Product Length240
Publication[view all]
CommentBAC_ID=FITB5062.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:35270970..35271209 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:33390793..33391032 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:31841525..31841762 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_01chromosomeD10_01:28085238..28085477 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr10chromosomeAt_chr10:4588654..4588893 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:33153645..33153884 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:34568882..34569120 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:33660982..33661221 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:33631280..33631519 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:34183626..34183865 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:34004383..34004622 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:33876752..33876991 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:33762720..33762959 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:35839992..35840229 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:33433102..33433341 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:34785615..34785854 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:26699038..26699277 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:33168642..33168882 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:35471928..35472169 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:27691310..27691550 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:26236600..26236840 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:63031040..63031287 -Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>PGML0394 ID=PGML0394; Name=PGML0394; organism=Gossypium raimondii; type=genetic_marker; length=240bp
ACCCAAATCATGGTTTCCAAATTATGAAAATGGATTTGGATTTGTTCAAA
TTCAAATCTATTTTTTTATCCAAACAAAGAATTAGGATTTCCAAATCCAA
ATCCAAATTTTTTTAACCCAAATCATGATTTCCAAACAAGCTGAAAAAAG
GACGCCTCCTTTTCTCTCTTTCTTGTTGATAGGTTCCAACTAAAACAATG
TAGTATTTAAATGTTATTTAAGCAGAGCAGGAGAGACAAA