PGML0373, PGML0373 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0373
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TA)10
Primer 1PGML0373_F: CGAGCTCGAATTTAGGGTTT
Primer 2PGML0373_R: CCGGTTGTAATGAATGGATTG
Product Length159
Publication[view all]
CommentBAC_ID=FITB945.y2 1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:67606310..67606467 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:61889284..61889447 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:59900624..59900782 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
At_chr9chromosomeAt_chr9:84541159..84541316 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:63238616..63238773 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:65851215..65851372 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:64441067..64441224 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:65245927..65246084 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:62161427..62161584 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:62085719..62085882 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:61907232..61907395 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:62281071..62281230 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:65948915..65949075 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:62422555..62422718 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:65689687..65689844 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:59508542..59508700 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:34972445..34972607 -Gossypium gossypioides (D6) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY22 x LY343, RIL (2020)D06N/A35.11PGML373View
Sequence
>PGML0373 ID=PGML0373; Name=PGML0373; organism=Gossypium raimondii; type=genetic_marker; length=159bp
CGAGCTCGAATTTAGGGTTTAATATTTATGATTTAATTTGACATAATTAG
ATTTTTTACTTACTTTTAAGGTACAATTTACAAGTAATATATATATATAT
ATATATAACTACAATCAAAATCAACACAAACATAATTACAATCCATTCAT
TACAACCGG