PGML0370, PGML0370 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0370
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAAT)3
Primer 1PGML0370_F: TGCAAGACATTAATTACAGATGC
Primer 2PGML0370_R: ATTCGGCTGGAGCTTAAACA
Product Length379
Publication[view all]
CommentBAC_ID=FITB3808.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:41107986..41108256 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:37419948..37420326 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:35737660..35738038 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_06chromosomeD10_06:25408533..25408911 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr10chromosomeDt_chr10:42457914..42458184 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:38130405..38130675 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold333_ERROPOS659536supercontigScaffold333_ERROPOS659536:10243..10513 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:40131961..40132231 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:40022759..40023029 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:37104073..37104343 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:34511314..34511692 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:37859455..37859833 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:38248849..38249227 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:39959837..39960215 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:38083259..38083637 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:40473938..40474208 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:35603891..35604269 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:37847254..37847632 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:28975566..28975944 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:26786746..26787124 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch25_Dt.06N/A73.2PGML0370View
2CCRI-36 x G2005, RIL (2016)AD_ch25_Dt.06N/A56.79PGML00370View
Sequence
>PGML0370 ID=PGML0370; Name=PGML0370; organism=Gossypium raimondii; type=genetic_marker; length=379bp
TGCAAGACATTAATTACAGATGCATTTAATAAACAAGATATAATTAAAGA
CTCATATTATAATAACTAAAGTAACTAAAATAAATAAATAAAAGTCCTTA
TTCCAGCAACCAATTTAACAAACTAAAATTAAAAGTTTCATTTTGCACTT
GGGCCGCTCGAGTTTGGGCCAATCTTGGTGGTAATGAGTTGTGTCGTAAC
ATGATGCGCTTGGGATCGCATCAATTATTAAGTGTTTAATTAGTCAAATC
TGGACATTTTAATTATGTGTTAGATATGTTTTATTTTAATGCATGCATTT
AATATGTTTTAGTTAATACATATCATTAATTTGTCTTAGCTTATTATATC
ATTTTAATGTGTTTAAGCTCCAGCCGAAT