PGML0364, PGML0364 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0364
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AG)7
Primer 1PGML0364_F: GTTTGAAGTGGATCCGGAGA
Primer 2PGML0364_R: TGAGTCTGGCCTGACCTTCT
Product Length151
Publication[view all]
CommentBAC_ID=FITB3638.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:56395662..56395812 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A13chromosomeA13:96208959..96209119 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:52090587..52090746 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:99623465..99623624 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:50485850..50486000 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_13chromosomeKI_13:37519033..37519200 -Gossypioides kirkii genome ISU_v3n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:114954574..114954733 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:53194857..53195016 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:146941021..146941180 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr13chromosomeAt_chr13:21518614..21518824 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:72183307..72183467 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D13chromosomeD13:52254571..52254721 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:55294923..55295073 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:99366436..99366596 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:56277013..56277163 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:101739831..101739991 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:55441905..55442055 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:99852586..99852746 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:52137087..52137237 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:98303718..98303877 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:51819071..51819230 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:100570919..100571078 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:53128053..53128212 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:103962215..103962374 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:52866546..52866692 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:101553700..101553859 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:106520075..106520234 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017661.1chromosomeCM017661.1:56095704..56095863 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:52772309..52772468 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:101651316..101651475 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:56521517..56521667 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:102575987..102576147 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:107962787..107962946 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:112451486..112451645 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:50477322..50477472 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:10583989..10584148 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:52504770..52504929 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:37955093..37955249 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:36321932..36322091 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:55171107..55171266 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:35444191..35444350 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:27536925..27537084 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:34522688..34522847 +Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:104312901..104313059 -Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:87549988..87550147 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:11817778..11817936 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0364 ID=PGML0364; Name=PGML0364; organism=Gossypium raimondii; type=genetic_marker; length=151bp
GTTTGAAGTGGATCCGGAGATCAAAACTGGCAGTCAAATCGACTTGGGGT
CTCCAGTTCCAGTGTGCATGAAATTCAGCAGGAAAATGAGAAAGAGAAGA
GAAGAGCGAAAGCTTACCGGGTTTAACGAAGAGAAGGTCAGGCCAGACTC
A