PGML0356, PGML0356 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0356
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AACAGC)3
Primer 1PGML0356_F: GAAAGCGACAATGGTTTGGT
Primer 2PGML0356_R: TTCTACGGCTGAGGCTGAAT
Product Length294
Publication[view all]
CommentBAC_ID=FITB3762.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:57457358..57457650 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:56763392..56763685 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018217.1chromosomeCM018217.1:52143485..52143770 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:43695864..43696156 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_07chromosomeD5_07:19712840..19713133 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_01chromosomeD5_01:4732588..4732880 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_06chromosomeD5_06:18882483..18882776 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_04chromosomeD5_04:2106523..2107080 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_10chromosomeD10_10:1716264..1716556 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_06chromosomeD10_06:6267919..6268211 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_06chromosomeD10_06:10174653..10174939 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_06chromosomeD10_06:43509192..43509478 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_01chromosomeD10_01:17987140..17987433 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_11chromosomeD10_11:15454234..15454526 -Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_09chromosomeD10_09:39597400..39597692 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:5698953..5699245 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:55159735..55160027 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:56362910..56363202 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:57232026..57232318 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:57026385..57026677 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:56783366..56783659 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:50075921..50076206 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:59423382..59423675 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D03chromosomeD03:52888700..52888985 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:36737137..36737429 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017627.1chromosomeCM017627.1:56297579..56297872 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:58655304..58655596 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:53175470..53175755 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:59374699..59374991 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:4724674..4724967 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeChr12:13834058..13834351 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:33192322..33192615 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:18675524..18675817 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:2063855..2064414 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:16194200..16194473 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr05chromosomeChr05:45319963..45320249 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr01chromosomeChr01:9709266..9709556 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_10chromosomeChr_10:36571138..36571424 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:61541976..61542262 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:3831174..3831467 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Unplaced_3416421chromosomeUnplaced_3416421:2272..2563 +Gossypium gossypioides (D6) genome ISU_v1n/a
Sequence
>PGML0356 ID=PGML0356; Name=PGML0356; organism=Gossypium raimondii; type=genetic_marker; length=294bp
GAAAGCGACAATGGTTTGGTTAATACATCAGCAACTTGATCGGACGCAGG
AACTTCCCCTACAAAAACTGAACCATCGGCAACCTTCTCCCGAACAAAAA
ATAAATCTAACTCCACATGCTTGAACTTGGAGTGTAACACAGGGTTAACA
GCAACAGCAACAGCACTAGAACTATCACACCATATATTTGGTGGAGAAGC
AGACCTAATATGCAACTCTTGTAACAACGAAAGTAACCACATAACATCAC
TTGTAACAGCAGCAAGACTTCTGTATTCAGCCTCAGCCGTAGAA