PGML0354, PGML0354 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0354
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAAA)4
Primer 1PGML0354_F: TTTCTTTCACGATAAGAGCACAA
Primer 2PGML0354_R: TCTTCGAGAATGTGCTCCAC
Product Length236
Publication[view all]
CommentBAC_ID=FITB3777.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:62125734..62125977 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:59365138..59365369 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:9384759..9384994 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:59424443..59424671 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:128842089..128842319 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold165.1supercontigscaffold165.1:1221786..1222029 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:57281479..57281722 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:62002967..62003210 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:61244135..61244378 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:61958330..61958573 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:59233005..59233248 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:58811969..58812200 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:61846432..61846663 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:61261567..61261814 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:62769641..62769888 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:58874038..58874281 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017711.1chromosomeCM017711.1:58008209..58008440 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:61804032..61804275 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:7691209..7691444 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:88455553..88455787 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:58937960..58938170 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:42631437..42631665 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:40011165..40011389 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:59856138..59856373 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07_5960710chromosomeChr07_5960710:3331..3553 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:38541914..38542140 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:100118621..100118853 +Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>PGML0354 ID=PGML0354; Name=PGML0354; organism=Gossypium raimondii; type=genetic_marker; length=236bp
TTTCTTTCACGATAAGAGCACAATAAATAAGAAAAGTAGCAGTTAAAATA
AGTGAAATACAATGGTATTAATCTACCCATAACTTGGAATAATTAAACTA
ATTAATGGTAGATAAGGGTTAATACTAAATAAATAAATAAAGGTTAGTTT
ATAAGGGATCTATCCATATCATCTTCTTTTTCAATGCTCACATAAAATAT
CATTGTGAAATTTCATGTGGAGCACATTCTCGAAGA