PGML0349, PGML0349 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0349
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATTTT)4
Primer 1PGML0349_F: TATGGAGGGAAGGAACGATG
Primer 2PGML0349_R: TCGTGAGCACGAGAGATAGAGA
Product Length271
Publication[view all]
CommentBAC_ID=FITB6207.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:25796392..25796660 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:24944536..24944804 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:23311131..23311400 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_07chromosomeD10_07:29908374..29908642 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:70690975..70691239 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr1chromosomeDt_chr1:59739813..59740081 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:24794824..24795092 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:25272406..25272674 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:24636993..24637261 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:25304592..25304860 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:24727881..24728149 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:25166313..25166581 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:25017900..25018168 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:25269564..25269831 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:25519906..25520174 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:25331570..25331838 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:25580076..25580344 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:28937923..28938193 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:25248614..25248882 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:21670603..21670871 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:19505710..19505978 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:24581508..24581775 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:16416581..16416851 +Gossypium gossypioides (D6) genome ISU_v1n/a
E07chromosomeE07:53418087..53418356 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr07chromosomeChr07:94505198..94505466 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0349 ID=PGML0349; Name=PGML0349; organism=Gossypium raimondii; type=genetic_marker; length=271bp
TATGGAGGGAAGGAACGATGGGTGCTCTTATATAGCCAACAAATTTTCAA
ATTTTGGTTTATTTCCCCTAAGGCCCCTTCCTATTCTCTCCATTTTTCAA
CTAAATCCCATTTCAATTAAAACTATTTATTTTCACATATGACCTCTAAT
TTAAAATACATTTCATTTTAATCTATACCAATATATATTTAATAACCTAA
TTATTATATTTTATTTTATTTTATTTTCTACAACTCTAATTGTGATATCT
CTCTATCTCTCGTGCTCACGA