PGML0344, PGML0344 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0344
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(T)17
Primer 1PGML0344_F: CATCCATGTGAGATTGGTTTG
Primer 2PGML0344_R: TGCAACGCAACAATGAATTT
Product Length107
Publication[view all]
CommentBAC_ID=FITB6163.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:53453429..53453532 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D04chromosomeD04:53481824..53481922 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:51338332..51338436 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018218.1chromosomeCM018218.1:51366827..51366925 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:2751133..2751238 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_04chromosomeD5_04:2740224..2740321 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_04chromosomeD10_04:49597357..49597456 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr12chromosomeDt_chr12:1874216..1874319 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr12chromosomeDt_chr12:1845687..1845785 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:48381535..48381638 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D04chromosomeD04:48409942..48410040 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:53255405..53255508 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D04chromosomeGhir_D04:53283793..53283891 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:82217465..82217560 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:54002641..54002744 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:54030568..54030666 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:53121071..53121169 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:53092686..53092788 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:51117434..51117537 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D04chromosomeD04:51145829..51145927 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:49396244..49396348 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D04chromosomeGbar_D04:49424721..49424819 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:78671442..78671537 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:54495841..54495945 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D04chromosomeD04:54524325..54524423 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:51465985..51466088 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017626.1chromosomeCM017626.1:51494463..51494561 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:54230619..54230723 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017652.1chromosomeCM017652.1:54259108..54259206 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:51693458..51693562 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017704.1chromosomeCM017704.1:51721905..51722003 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:55034027..55034130 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D04chromosomeD04:55062421..55062519 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:2706129..2706235 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:2695222..2695320 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_12chromosomeChr_12:21835718..21835817 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:51277839..51277939 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:19934103..19934202 -Gossypium gossypioides (D6) genome ISU_v1n/a
Sequence
>PGML0344 ID=PGML0344; Name=PGML0344; organism=Gossypium raimondii; type=genetic_marker; length=107bp
CATCCATGTGAGATTGGTTTGTTTTTTTTTTTTTTTTTCTAGATTTATGA
TTTGGTAGTGAGATTTTGAAGTGATTTCTTTATTTTTAAATTCATTGTTG
CGTTGCA