PGML0339, PGML0339 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0339
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAAAT)3
Primer 1PGML0339_F: AGGAAGCAATTGAAAGGCAA
Primer 2PGML0339_R: TGATCAATGGGATAATTACAATGC
Product Length269
Publication[view all]
CommentBAC_ID=FITB8280.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:50778771..50779040 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:48431329..48431598 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:19904345..19904613 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr7chromosomeDt_chr7:40823914..40824183 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:46001693..46001962 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:50984797..50985062 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:50530761..50531030 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:50900249..50900516 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:48210915..48211184 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:48184187..48184456 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:51308700..51308969 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:50567086..50567355 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:51639935..51640204 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:48211933..48212202 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:50815298..50815567 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:28970582..28970844 -Gossypium aridum (D4) genome ISU_v1n/a
Sequence
>PGML0339 ID=PGML0339; Name=PGML0339; organism=Gossypium raimondii; type=genetic_marker; length=269bp
AGGAAGCAATTGAAAGGCAACATGTGGCATGCCAAATATGAAATAAATTA
TAAAATATAAAAAAGATAAAAATATATTAAAAATAATAAAAATTGTAAAA
TAAAAATAAAAATATTATTAATATCTTATTACGTGGATGTCTATACAGAT
AAGATAAGTTTTGATATACTTTAAATTATAATAGTTATTAGAATTAGATC
TCTACATTTATACTTCTTATGCCTATAAATAGAGACTTTGAAGAAGCATT
GTAATTATCCCATTGATCA