PGML0333, PGML0333 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0333
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(GCCTTT)4
Primer 1PGML0333_F: TATAACACACGGGACGCACA
Primer 2PGML0333_R: ACAATGACTTCGCCCTCAAC
Product Length284
Publication[view all]
CommentBAC_ID=FITB8220.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:89133151..89133517 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D03chromosomeD03:1237151..1237430 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018203.1chromosomeCM018203.1:98673944..98674310 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018217.1chromosomeCM018217.1:1175216..1175495 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:1125446..1125729 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:1270794..1271160 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:1079343..1079623 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr5chromosomeDt_chr5:16554953..16555232 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:82226588..82226954 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D03chromosomeD03:1202447..1202726 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:106862427..106862793 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:1202783..1203062 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:107063369..107063735 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:1176505..1176784 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:104522508..104522874 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:1195773..1196052 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:103111500..103111866 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D03chromosomeD03:1200325..1200604 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A02chromosomeGbar_A02:98991385..98991751 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:1167825..1168104 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:100935781..100936147 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D03chromosomeD03:1175165..1175444 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:103917966..103918332 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017625.1chromosomeCM017625.1:1171462..1171747 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:108673236..108673598 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017651.1chromosomeCM017651.1:1226467..1226746 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:101085808..101086174 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017703.1chromosomeCM017703.1:1194808..1195087 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:106966677..106967043 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D03chromosomeD03:1240483..1240762 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:91718789..91719155 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:101332282..101332648 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:1134095..1134379 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:1138884..1139186 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_03chromosomeChr_03:997906..998212 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:1138304..1138628 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:989854..990164 -Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:1220101..1220408 -Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0333 ID=PGML0333; Name=PGML0333; organism=Gossypium raimondii; type=genetic_marker; length=284bp
TATAACACACGGGACGCACACGTTAAAGGCAAGAAGAAGAAGCTTGAAGT
TCACAAAAGTTTTAAATTGGAAGATGTTTAGATTCTGATTTATATCATTC
ACAAAAAAAGATGGTCTCCCATTACTCCCTAAAAGAAAAATAAAGGCAAA
GGCTGCCTTTGCCTTTGCCTTTTGCCTTTTGGGTATTCATATCAATAATC
TACTCAAAAAAAAAGTTAGTATATTACATAAATTTTAAAGGGACTAAAAT
GATAATTTTACCATGTTGAGGGCGAAGTCATTGT