PGML0328, PGML0328 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0328
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAT)6
Primer 1PGML0328_F: AAGCTCGGGCCTTAAATGTT
Primer 2PGML0328_R: TTGCCCAAGCTGGTTTATATG
Product Length319
Publication[view all]
CommentBAC_ID=FITB3782.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:57097254..57097570 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:54538787..54539103 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:14019264..14019582 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold269.1supercontigscaffold269.1:1114426..1114742 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:52185091..52185407 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:57080372..57080688 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:56488446..56488762 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:57029365..57029681 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:54332125..54332441 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:54265606..54265922 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:57144251..57144567 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:56435314..56435630 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:57814909..57815230 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:54147495..54147811 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:56879328..56879644 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:12320963..12321281 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:54246902..54247233 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr07chromosomeChr07:54779304..54779618 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:32692852..32693168 -Gossypium aridum (D4) genome ISU_v1n/a
Sequence
>PGML0328 ID=PGML0328; Name=PGML0328; organism=Gossypium raimondii; type=genetic_marker; length=319bp
AAGCTCGGGCCTTAAATGTTCAAATTCGAGCCCGACCTATATTTTAAACA
GGTCTAATTTTTTTTGTCTAAATTCATTTTTCGAATATTATATTTTTATC
CATAACCTCCCAAATTTCGGATCCGCATGCAGTACCGGAAGAATAACCTG
ATTATTAATCTCAATCTTTACTAACCTTTTCATGGATAAAGCTTCATCCA
ATTCCACAATTCCTTCTTGATTGGACTACTCAGATTTGAGCCTTTCCTAA
TAATAATAATAATAATACCAAGAAAATTTAGCAAATATACAGCCAAGTCA
TATAAACCAGCTTGGGCAA