PGML0320, PGML0320 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0320
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TCTCT)2
Primer 1PGML0320_F: TCAACCAAATACCAATAAATTACCTT
Primer 2PGML0320_R: TCCTCCTCCTCCTTCACCTT
Product Length309
Publication[view all]
CommentBAC_ID=FITB3713.x2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:22878551..22878857 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A01chromosomeA01:32906179..32906488 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:21827116..21827423 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:30257483..30257792 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:20806854..20807161 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:40785941..40786248 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:39483605..39483910 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:63881867..63882177 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr2chromosomeDt_chr2:36718079..36718385 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr2chromosomeAt_chr2:20874953..20875262 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:21060427..21060733 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:31503570..31503879 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:22394170..22394476 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:31307037..31307346 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:21844312..21844618 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:31140368..31140677 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:21963547..21963853 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:31664911..31665220 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:22304328..22304634 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:31408254..31408563 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:22432543..22432850 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:30563856..30564165 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:22143027..22143334 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:30460016..30460325 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:22196848..22197155 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:32157232..32157541 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:23323362..23323669 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:31918858..31919162 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:22131485..22131792 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:30501308..30501617 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:22700778..22701084 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:32220930..32221239 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:33216074..33216382 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:40858664..40858971 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_01chromosomeB_01:30194954..30195262 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:21672639..21672949 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:31150155..31150503 +Gossypium armourianum (D2-1) genome ISU_v1n/a
chr02chromosomechr02:18229222..18229529 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:15690461..15690768 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:21126346..21126653 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:18852082..18852389 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:13727022..13727330 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:17084597..17084904 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr01chromosomeChr01:85617418..85617726 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0320 ID=PGML0320; Name=PGML0320; organism=Gossypium raimondii; type=genetic_marker; length=309bp
TCAACCAAATACCAATAAATTACCTTTCTCTTCTCTTCTCCCCCTTTTTG
TTATATAAAAAATCAATAAATAAAGCTTAAGAGAGAGAGATATTGTTAGT
CCAAGAAAAGAAATTTTTAACAAAGATATGAAGACGTAGAACTAACATTA
ATGTACCAAAATAAACTGTCAAGTATCTACAAACAAGATACCAAAATAAA
AAATTAAGTTCTAACATAAAGATAGGAAAATGTGCAATGAAAATGAGTAA
AATCATGAGAAAATGAAATATATGCATCCTAATCTTCTTAAGGTGAAGGA
GGAGGAGGA