PGML0318, PGML0318 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0318
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TA)13
Primer 1PGML0318_F: GAACAGTTGCATTCCCTTGG
Primer 2PGML0318_R: GAGAACGATACCTTGCTCGG
Product Length320
Publication[view all]
CommentBAC_ID=FITB7552.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:1927447..1927756 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:1977448..1977758 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:1792212..1792524 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:1890413..1890725 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:60739740..60740057 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:127484185..127484501 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:62257046..62257364 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:2415196..2415506 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1957.1supercontigscaffold1957.1:30667..30976 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold26.1supercontigscaffold26.1:1396362..1396672 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:1645773..1646082 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:1862561..1862871 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:2165986..2166292 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:1600905..1601215 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:1902174..1902483 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:1908341..1908651 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:1970237..1970546 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:1231696..1232006 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:2019208..2019517 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:2028943..2029253 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:1820561..1820873 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:1968873..1969185 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:1861090..1861402 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:1935597..1935909 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:1848464..1848775 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:2061807..2062117 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:1893297..1893606 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:2085873..2086185 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:1875064..1875376 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:1936813..1937123 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:1962233..1962542 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:1999468..1999778 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:1867329..1867635 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:1852856..1853172 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:1661532..1661850 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:97202159..97202483 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:1639698..1640018 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_11chromosomeChr_11:1378686..1379256 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:1864831..1865140 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:1328497..1328935 +Gossypium gossypioides (D6) genome ISU_v1n/a
E10chromosomeE10:111559735..111560041 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:1853264..1853576 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0318 ID=PGML0318; Name=PGML0318; organism=Gossypium raimondii; type=genetic_marker; length=320bp
GAACAGTTGCATTCCCTTGGGAAGCAAAAAAATCGCAATCACTTATCTAC
AAAAGCCAGATGGTTGCTAGTAGAGTTTTTCTAGTTACCAATTACAGAAA
ATTCAGCTCACTTATATATATATATATATATATATATAATAATAACATCG
AAAGATATCGAGTTTCCGACCATTCTTCCAGATGAAACACGTTACATGAA
AAGATTTTAGGGGCATACGCAAAGAGATGAATATATAGAATTACAATGAC
ATGATAAAGCAATTACCGGTTTAAACCGAGTCTACACCTTCAACCTGTTG
CCGAGCAAGGTATCGTTCTC