PGML0302, PGML0302 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0302
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AT)14
Primer 1PGML0302_F: GCCCTTGCCTTCTTTCTTCT
Primer 2PGML0302_R: TCCCAGAAGGGAAGTTCAAT
Product Length274
Publication[view all]
CommentBAC_ID=FITB7650.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:18767855..18768114 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:17738637..17738894 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:48398791..48399062 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:17018899..17019154 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:29074200..29074472 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr2chromosomeAt_chr2:56111005..56111264 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:18053383..18053642 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D11chromosomeD11:17814837..17815096 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:18293206..18293465 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:18079043..18079302 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:18003674..18003931 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:17916475..17916732 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:17765163..17765420 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:18209967..18210223 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:17907467..17907724 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:18652629..18652888 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:46319140..46319411 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:20426223..20426482 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:17861200..17861454 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:14835906..14836193 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:15111036..15111293 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:17857364..17857628 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:13717778..13718043 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:12079480..12079736 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:14281401..14281666 -Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:23349182..23349523 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:16725703..16725957 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0302 ID=PGML0302; Name=PGML0302; organism=Gossypium raimondii; type=genetic_marker; length=274bp
GCCCTTGCCTTCTTTCTTCTTCCTCGTGGCACCCACCCGATCTTTCGAAG
GATTTCTTCAGGTAATCTGCAAATCGAATTATATATATGCATATACACAC
TCACACATAAATATGCATATATATATATATATATATATATATATGGTTTC
TTGTTGCTTTTTTCTCTCTATTTTTATTCAGTTAAAAACAAATCTGTTTT
TAGTCAAAGTTCAAAGCGTTTCTATAGCAGATCTGAAGGGTTTTTCGCTG
TAAAATTGAACTTCCCTTCTGGGA