PGML0299, PGML0299 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0299
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAT)5
Primer 1PGML0299_F: GATCAGCTAATCCAGGCTGC
Primer 2PGML0299_R: TTCATACAACAACAGCAGCAGA
Product Length260
Publication[view all]
CommentBAC_ID=FITB7673.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:20127960..20128222 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D06chromosomeD06:20110072..20110334 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:32166203..32166459 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:18856686..18856948 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:30230960..30231216 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:19079227..19079486 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:10104180..10104450 -Gossypioides kirkii genome ISU_v3n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:33241106..33241362 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:42823271..42823535 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr10chromosomeDt_chr10:27318882..27319144 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:46173426..46173682 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:30143029..30143285 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:19774231..19774493 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:32042617..32042873 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:19272319..19272581 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:31044752..31045008 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:19723692..19723954 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:31195812..31196068 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:19281644..19281906 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:31042530..31042786 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:19037265..19037527 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:30004993..30005249 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:18781795..18782057 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:30160104..30160360 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:19580878..19581137 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:31229859..31230115 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:19199742..19200010 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:32523073..32523329 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:19072797..19073059 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:19974265..19974527 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:32044506..32044762 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:32980914..32981170 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:34219580..34219836 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:18865512..18865771 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:68481693..68481949 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:19456631..19456892 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:16240717..16240979 -Gossypium armourianum (D2-1) genome ISU_v1n/a
chr10chromosomechr10:16240192..16240454 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:15048861..15049126 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:20260998..20261254 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:20263698..20263954 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:13555978..13556249 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:11672122..11672383 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:14200536..14200798 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:85442438..85442681 +Gossypium stocksii (E1) genome NSF_v1n/a
E06chromosomeE06:85483204..85483447 -Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:28968436..28968692 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0299 ID=PGML0299; Name=PGML0299; organism=Gossypium raimondii; type=genetic_marker; length=260bp
GATCAGCTAATCCAGGCTGCCATGGAACTGAAAGTACTGATCAACCTTGC
ATTGCATCATTTTTGTCTTTCATGTTCCTTTGTGTTATGTTATTTCTGTA
TGCCGTAAGAGAAGATAACTAATGGTTATATCACTATTCCAGGTTAGAAG
CTGTTTTATGAGTAATTTATTATTATTATTATTTCTGTTTCTGAATCCAT
TAATTGGGGGGCAAAAGCAACACAAGAAACTTTATTAGTCTGCTGCTGTT
GTTGTATGAA