PGML0284, PGML0284 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0284
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(A)17
Primer 1PGML0284_F: TCGTTGGAACTTGGAAGACC
Primer 2PGML0284_R: AAGCTATTGGAAAGAATATGTGCC
Product Length218
Publication[view all]
CommentBAC_ID=FITB8666.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:57279285..57279497 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:96164447..96164662 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:53810610..53810821 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:93020831..93021047 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:5877979..5878195 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:48832104..48832318 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:8401836..8402052 +Gossypium australe (G2) genome CRI_v1.1n/a
CM016615.1chromosomeCM016615.1:99440..99654 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:50300465..50300677 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:53787131..53787343 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:81554219..81554434 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:56200548..56200760 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:100808651..100808866 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:55519903..55520115 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:101116274..101116489 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:56299123..56299335 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:98961178..98961393 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:54469576..54469788 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:95875998..95876213 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:52820999..52821210 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:95764459..95764675 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:54611396..54611607 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:54542282..54542495 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:96171441..96171656 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:57427469..57427681 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:55130821..55131032 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:95362107..95362323 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:56656804..56657016 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:102489091..102489306 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:103593786..103594002 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:110536011..110536227 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:51861670..51861884 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:81845917..81846133 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:52152320..52152536 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:40369695..40369977 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:38587214..38587508 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:53796966..53797183 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:37489692..37489907 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:29203717..29203936 -Gossypium gossypioides (D6) genome ISU_v1n/a
E12chromosomeE12:107112592..107112813 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr12chromosomeChr12:164486299..164486516 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0284 ID=PGML0284; Name=PGML0284; organism=Gossypium raimondii; type=genetic_marker; length=218bp
TCGTTGGAACTTGGAAGACCAGACCAAAACTTTTTTTTCCCCATAATCCT
CTTTTTAATGGGTTTGGTAAGGTTCTTCTACCTCTCCTTCTCGTCCAATG
AGCTTTCACCTCTACTTTCAATTTCAATTTCTTTTATTGTTTATTTCTCC
TTTTCTGAAAAAAAAAAAAAAAAACCCCATGAGGTTTGCTTTTAGGCACA
TATTCTTTCCAATAGCTT