PGML0280, PGML0280 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0280
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(CCCATG)4
Primer 1PGML0280_F: GACATGGCACACTGAAGCAT
Primer 2PGML0280_R: AAATGGCACCATCACAACAA
Product Length231
Publication[view all]
CommentBAC_ID=FITB2720.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:59958304..59958552 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:58606204..58606461 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:52463191..52463421 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D01chromosomeD01:57205235..57205483 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:58889173..58889415 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:60466133..60466381 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:60301833..60302081 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:57539111..57539353 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:58828807..58829064 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:59483348..59483605 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:59702110..59702347 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:109081243..109081470 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:61168550..61168781 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:116483039..116483266 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:59179018..59179260 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:106592358..106592585 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:60789264..60789512 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:48272361..48272591 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:93269473..93269699 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr_02chromosomeChr_02:38790021..38790357 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:57850865..57851096 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:41987088..41987425 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:40507011..40507355 -Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:110988511..110988748 -Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:94176885..94177116 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0280 ID=PGML0280; Name=PGML0280; organism=Gossypium raimondii; type=genetic_marker; length=231bp
GACATGGCACACTGAAGCATCACTTTCAGCTTCTGTTTTGTCTAACAAAA
ATCCCATGCCCATGCCCATGCCCATGCCAATGGTTGCTTATATATAAGTA
TAACCACCCCCTAATGAAACCCAGATTCATCTCATATATTATTCCTCAAA
GAAATAGTTTTTTTTTTCTTGGGGGGGTCCCTAAAGATGACAAACCAAGA
AAACTCAGTGATTGTTGTGATGGTGCCATTT