PGML0278, PGML0278 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0278
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATT)11
Primer 1PGML0278_F: AAAGAGACACAAAGCATGGGA
Primer 2PGML0278_R: TCGTTCTTAGTTTATTTGTGGGAA
Product Length280
Publication[view all]
CommentBAC_ID=FITB2798.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:30976805..30977069 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A13chromosomeA13:37858737..37859005 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:28611045..28611309 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:35700453..35700721 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:27592251..27592530 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:51933552..51933820 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:29731094..29731367 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:87460456..87460767 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2408.1supercontigscaffold2408.1:70590..70858 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr13chromosomeDt_chr13:4157537..4157801 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:27449080..27449344 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold3524_A13supercontigscaffold3524_A13:209614..209882 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:35092373..35092641 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:32612251..32612515 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:37594203..37594471 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:32192423..32192687 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:36336596..36336864 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:28409775..28410039 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:35841371..35841639 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:28394908..28395172 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:36279175..36279443 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:30011548..30011812 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:38599957..38600225 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:29724811..29725075 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:37266572..37266840 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:31769592..31769842 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:38464726..38464994 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:29692326..29692590 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:37336518..37336786 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:32286524..32286788 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:37569699..37569967 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:35963878..35964147 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:50862805..50863073 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:27783613..27783889 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:46105054..46105326 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:28761584..28761866 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_13chromosomeChr_13:19682240..19682513 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:30929059..30929349 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:15165622..15165866 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:19232932..19233196 -Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:62072545..62072808 -Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:39965192..39965471 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0278 ID=PGML0278; Name=PGML0278; organism=Gossypium raimondii; type=genetic_marker; length=280bp
AAAGAGACACAAAGCATGGGATTATAAAGACCTCTGAAATAAAGTTTTCT
AAATTGGGCTTAAACAGAAATTTAACCTACTTTGCTTAGGGGCGAAAAAG
GTGTCGAAGCATATTATTATTATTATTATTATTATTATTATTATTTACAA
ACTTTTTTTTTCATATATGGTTTTATTAATAGAGGTTAGAAATAGATGAT
ATAAGCAGTGATTACTTAAAAAGAGGGTCAATAGTGTAAATAACATGATA
ACAAAATTCCCACAAATAAACTAAGAACGA