PGML0276, PGML0276 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0276
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAAAT)4
Primer 1PGML0276_F: AAGTTATGCCTGAACTTTGTGTT
Primer 2PGML0276_R: CGAATTCAAATGATTACAAGAGGA
Product Length270
Publication[view all]
CommentBAC_ID=FITB2790.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:48276860..48277132 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:45408698..45408971 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:21493700..21493969 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:8979230..8979975 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:2891230..2891498 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_03chromosomeD10_03:21383997..21384268 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr5chromosomeDt_chr5:32135745..32136017 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:45841251..45841523 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:47733393..47733664 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:48292160..48292432 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:49101263..49101535 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:46453037..46453309 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:45929099..45929372 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:47292139..47292411 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:48143551..48143823 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:49364256..49364529 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:46844813..46845086 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:49862856..49863128 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:42296819..42297087 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:15461133..15461396 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr05chromosomeChr05:44517173..44517443 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr05chromosomeChr05:45898913..45899183 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:50440783..50441042 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:11256078..11256341 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E03chromosomeE03:89013042..89013313 +Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:79082718..79082987 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0276 ID=PGML0276; Name=PGML0276; organism=Gossypium raimondii; type=genetic_marker; length=270bp
AAGTTATGCCTGAACTTTGTGTTAGAATTAAGTGACATGAATCCTTATTT
AAATAAAATACAATAGTAAAATAAAATAAAAGTAAAATCAATATAGAACT
ACACTTTTTTATTTTATTTTAGAATAAGGTTTTTTAAAACCTTATTAAAC
TCCATCTATTTGATATTGATTAGAATAAGGTGATTCAATATTACTACGCT
CCTATTAGAATATGGTTTTACAAGCCTATAAATAAACATAGTCTACTCCT
CTTGTAATCATTTGAATTCG