PGML0275, PGML0275 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0275
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAAA)5
Primer 1PGML0275_F: TCCCTATTTCCCTAAACGGC
Primer 2PGML0275_R: GAGGCCTCTCCCTTCATTGT
Product Length293
Publication[view all]
CommentBAC_ID=FITB2950.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:30959230..30959522 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D09chromosomeD09:31097674..31097965 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D5_09chromosomeD5_09:24132750..24133041 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_05chromosomeD5_05:49182237..49182528 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_05chromosomeD5_05:49190662..49190955 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_03chromosomeD5_03:53445118..53445409 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_04chromosomeD5_04:46439516..46439809 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr6chromosomeDt_chr6:22348958..22349252 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:29652342..29652636 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D08chromosomeD08:18958523..18958817 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold48125supercontigscaffold48125:525..817 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:31441499..31441791 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:31374712..31375004 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:31382724..31383018 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:31057886..31058178 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:31065977..31066271 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:29301021..29301313 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D09chromosomeD09:29309112..29309406 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D01chromosomeD01:8967232..8967535 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:30281841..30282138 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017631.1chromosomeCM017631.1:30273920..30274212 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017627.1chromosomeCM017627.1:43770062..43770363 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:51699354..51699650 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017657.1chromosomeCM017657.1:31478210..31478502 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017657.1chromosomeCM017657.1:31486105..31486400 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017657.1chromosomeCM017657.1:36142090..36142394 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D09chromosomeD09:32610917..32611209 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D09chromosomeD09:32619009..32619303 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:29597673..29597965 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:14653826..14654117 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:46872550..46872844 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Sequence
>PGML0275 ID=PGML0275; Name=PGML0275; organism=Gossypium raimondii; type=genetic_marker; length=293bp
TCCCTATTTCCCTAAACGGCGTCGTCCAATCAGGATCGAATTGAAATCAA
AAATAAATAAAGGGGTAAATTTAAAAATAAAAACTTAATTACAAAAATAT
TAAAAGGCGGAGGGCCTAAATAAAATAAATAAATAAAATTTGCAGTGGTA
TCACCTTCTCCCTTTTTTTAAAATCGTAAATAAGTAAAAAATAATGGAAA
GAAAAAAAATAGTAAGCCACCTTTAAAAAACTGCCAATCGTTTTCTTTTT
TTATTCCTCCCTCTTTTTTTTCTACAATGAAGGGAGAGGCCTC