PGML0273, PGML0273 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0273
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(GT)9
Primer 1PGML0273_F: ATCACAAACGCGTTGCAATA
Primer 2PGML0273_R: ATGGCATCCAACATCAAACA
Product Length356
Publication[view all]
CommentBAC_ID=FITB2949.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:5574123..5574484 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:4867887..4868245 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:5458124..5458482 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:4588201..4588556 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:3667965..3668405 -Gossypioides kirkii genome ISU_v3n/a
D10_06chromosomeD10_06:55224807..55225164 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:139469136..139469498 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr12chromosomeAt_chr12:53311258..53311619 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:4601843..4602204 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:5431058..5431419 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:5192612..5192973 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:5405297..5405658 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:4925502..4925863 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:4883526..4883884 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:5298287..5298645 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:4846371..4846729 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:5388721..5389079 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:5405651..5406012 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:5382554..5382917 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:5041233..5041594 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:5574222..5574578 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:4978311..4978675 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:5555716..5556074 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:5498145..5498506 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:5509547..5509905 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:4471173..4471528 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:91838596..91838947 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:5041178..5041531 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:4475840..4476223 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:4074979..4075391 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:5215776..5216133 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:3609494..3609849 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:3216915..3217287 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:4069630..4070080 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:111118065..111118418 +Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:4818738..4819092 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0273 ID=PGML0273; Name=PGML0273; organism=Gossypium raimondii; type=genetic_marker; length=356bp
ATCACAAACGCGTTGCAATAAGCTTACTTTTATTCCTAGTGAAACCAGAT
TGTTGTGAAGTTCTTCAAGTGCAAAAATCCCAGAAGTGTCTATGTTCATC
ACATCTGTCACAAAGGGAACCCGATTAGTCTATTCTCTAGTGTCTGTGTG
TGTGTGTGTGTGTTTTAATCTGTAAGATGATGAAACTCACTGGACATGTC
TAGGATTAAGATTTGCCCTGTGTCTTTTTCAGTTTCTTTTGTTCCACCTT
CTTCTGTCACGAGCCTCATTATTCTAAAACATGGGGATGAAAAAGTTATT
GATACCTGTCTTTTTTTGTAGTCTTTTCTTTTTTATTGTTTGATGTTGGA
TGCCAT