PGML0271, PGML0271 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0271
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAAA)4
Primer 1PGML0271_F: AAACGGAAGCGATCTTCAAA
Primer 2PGML0271_R: TATATTACCAACCCGCCAGC
Product Length264
Publication[view all]
CommentBAC_ID=FITB2852.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:2757692..2757967 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:1819152..1819414 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:2035623..2035898 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:1840073..1840338 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:2004305..2004568 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:2373448..2373724 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:59886659..59886934 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold72.1supercontigscaffold72.1:547543..547805 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr13chromosomeDt_chr13:23053854..23054129 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:2138947..2139222 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:1593900..1594175 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:2168493..2168766 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:2198662..2198923 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:2036471..2036746 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:2125058..2125333 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:2178302..2178564 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:2189215..2189490 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:1774319..1774581 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:2027693..2027968 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:2084259..2084523 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:1965328..1965603 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:2083498..2083773 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:1980839..1981102 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:2173455..2173730 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:2084424..2084688 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:2026143..2026418 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:2029138..2029407 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:2142320..2142595 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:2230521..2230783 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:2262477..2262749 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:2363815..2364091 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:1989183..1989446 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:2481947..2482219 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:2000693..2000967 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:2038991..2039261 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:1557192..1557467 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:2117680..2117963 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:2065502..2065777 +Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:1611275..1611702 +Gossypium gossypioides (D6) genome ISU_v1n/a
F08chromosomeF08:1796370..1796640 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0271 ID=PGML0271; Name=PGML0271; organism=Gossypium raimondii; type=genetic_marker; length=264bp
AAACGGAAGCGATCTTCAAATCTCCGGATTTGAAAGATCCAACAAAAAAA
ACAAAAACAAAAATGGCAATGAAGATCTAATGGAAGCCAAAAGCATGAAA
CGATGAACAAATATAAATAAATAAATAAATTTGTATATTAAAAAGAACAA
TTATTTACTTCAATAATTTAAACTAATTTTCGACGTGTTTATAACTGAAT
TCTTTGTTTTTGTTTGTGAAAGAATGGAGAGGGAGAGAGAGAGTGCTGGC
GGGTTGGTAATATA