PGML0270, PGML0270 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0270
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AT)20,(TGTAT)3
Primer 1PGML0270_F: TGAATGCACACACCAAATCA
Primer 2PGML0270_R: CAAATTGGCTCGCACTATCA
Product Length333
Publication[view all]
CommentBAC_ID=FITB2772.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:63205462..63205766 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:59509986..59510290 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:55687592..55687919 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
At_chr10chromosomeAt_chr10:76784320..76784624 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:59890076..59890380 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:62433566..62433870 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:62888077..62888381 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:62270684..62270988 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:59558651..59558955 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:59628929..59629233 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:61488151..61488455 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:61155519..61155824 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:63384726..63385031 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:59888797..59889101 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:63045505..63045809 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:58030618..58030927 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr04chromosomeChr04:60439449..60439755 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:38348923..38349239 +Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:39210575..39210915 +Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>PGML0270 ID=PGML0270; Name=PGML0270; organism=Gossypium raimondii; type=genetic_marker; length=333bp
TGAATGCACACACCAAATCATGTTCACATCATGTTTAAAATTTCATTTTG
ATCACCCAACTTCTAGGTCACATTCATTTTGGTCACCGAGAAAAAAAATT
TTAAATCTTGATCCTGGTAATATATATATATATATATATATATATATATA
TATATATATCAAAGTGAAAACGTAGCAGAAACTAAAATAATACATTAAAA
ATTTGTTGTATTGTATTGTATTTGTTTACCTTCTAATTTTTTTTTCAATG
TTGAAATTTTAAATTTTAAAACATTAAAATCAATTAAATAAATTATTTTA
AAAAATTATGATTTGATAGTGCGAGCCAATTTG