pAR0356, pAR0356 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	pAR0356
Genbank ID	CA992884
Type	RFLP
Species	Gossypium hirsutum
Germplasm	T-25
Source Type	cDNA
Restriction Enzyme	EcoR1; Xho1
Publication	[view all]

Cross References

External references for this genetic_marker


Database	Accession
DB:genbank	CA992884

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
A11	chromosome	A11:33535920..33536896 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
Ghir_A07	chromosome	Ghir_A07:77672097..77673073 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
A07	chromosome	A07:77578719..77579695 +	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
CM017616.1	chromosome	CM017616.1:77629064..77630040 +	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
A07	chromosome	A07:79459865..79460841 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a

Publications


Year	Publication
2004	Rong J, Abbey C, Bowers JE, Brubaker CL, Chang C, Chee PW, Delmonte TA, Ding X, Garza JJ, Marler BS, Park CH, Pierce GJ, Rainey KM, Rastogi VK, Schulze SR, Trolinder NL, Wendel JF, Wilkins TA, Williams-Coplin TD, Wing RA, Wright RJ, Zhao X, Zhu L, Paterson AH. A 3347-locus genetic recombination map of sequence-tagged sites reveals features of genome organization, transmission and evolution of cotton (Gossypium). Genetics. 2004 Jan; 166(1):389-417.

Germplasm


Stock Name	Type
T-25	accession

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Guazuncho-2 x VH8-4602, BC1 (2005)	AD_ch07_At.07	N/A	70.2	pAR356	View
2	Guazuncho-2 x VH8-4602, consensus (2009)	AD_ch07_At.07	N/A	30.1	pAR356	View
3	AD-genome wide Reference Map (2009)	AD_ch07_At.07	N/A	72	par0356	View
4	PD 94042 x (AD)4-08, F2 (2016)	AD_ch16_Dt.07	N/A	151.6	pAR356	View

Sequence

>pAR0356 ID=pAR0356; Name=pAR0356; organism=Gossypium hirsutum; type=genetic_marker; length=808bp
TTTTTTTTTTTTTTTTTTTTAAAAAAATATGGCAAGAAACTACCTTTTTA
TTCATTAGTTCTCAGCCGTTCCATTGGAAATCCAAAACAAAACAAAGAGA
AAGACCCCAAGCCAAATACCTCAATTAAAAAAGAAAAAGAAAAAGGGGGG
GGGGGTTTGAGGGGCTTAATTTAAGTACAACTTTGAAACAAATGGAATTC
CTAGGAGGGAAGTAAACAACTTAGTAGCCTTTAGGCTTGTAGGCAATGAA
ACTAATGCACTGCACTTGACGAACGTTGTCGAACCCAATGATTCTAATGA
ATGCATTGGGGTATTCCTTCTTGCAATTCTCAAGCTCCTCCAACACCTGA
GCCGAGTCAGTGCACCCAAACATGGGCAGTTTCCACATGGTCCAGTAGCG
TCCATCGTAGTACGTGGGTAAGCTCGAGTACTTACGGTGCACGAATCCCT
CCTCTAATTCGAATTCCAAGCAAGGAATCCATTTAGAGCGAAGAAGGTAA
TCTACTTCCTTAGCCAACTGTACGGGTGTAAGATCGGGGAGGTATGAGAG
TGTCTCGAACTTCTTCTTCCCAAGAGGAGGCCACACCTGCATGCATTGCA
CTCTCCCACCATTGCTTGCAAGAGAAGTGATGTCGTTGTTGGCCTTCCTA
GTGACTGGGAAAGCAGAGGCAGACTTGAGGCCGGTGAAGGGGGCCACCAT
GTTGGCCTGTGCCGGGGAGGAGCAGTTCACGGTGGCAATGGTTGCCGATG
AGATCATGGAGGAGGCCATTGCTATTACTGCTTACTAGTACTATATGCTA
CAGTTATA

Search form

pAR0356, pAR0356 (genetic_marker) Gossypium hirsutum